CDS

Accession Number TCMCG007C28112
gbkey CDS
Protein Id XP_033145297.1
Location join(17361910..17362089,17362277..17362332,17362589..17362667,17362766..17363050,17363120..17363230,17363317..17363487)
Gene LOC103865236
GeneID 103865236
Organism Brassica rapa

Protein

Length 293aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_033289406.1
Definition LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase COP1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category T
Description Zinc finger, C3HC4 type (RING finger)
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K10143        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko04115        [VIEW IN KEGG]
ko04120        [VIEW IN KEGG]
ko04712        [VIEW IN KEGG]
map04115        [VIEW IN KEGG]
map04120        [VIEW IN KEGG]
map04712        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000151        [VIEW IN EMBL-EBI]
GO:0000152        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009639        [VIEW IN EMBL-EBI]
GO:0009640        [VIEW IN EMBL-EBI]
GO:0009641        [VIEW IN EMBL-EBI]
GO:0009642        [VIEW IN EMBL-EBI]
GO:0009646        [VIEW IN EMBL-EBI]
GO:0009647        [VIEW IN EMBL-EBI]
GO:0009648        [VIEW IN EMBL-EBI]
GO:0009649        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009812        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010119        [VIEW IN EMBL-EBI]
GO:0010228        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031461        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042440        [VIEW IN EMBL-EBI]
GO:0042752        [VIEW IN EMBL-EBI]
GO:0042802        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046283        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048573        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0061630        [VIEW IN EMBL-EBI]
GO:0061659        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080008        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAAGCAATTTCGAAGGATCCGTTTGTTCCAGCTGTGAAACCCGACCAGAGAACAACCTCCATCGGGGAAGCTGCTCACCGTCATGAAAACGACGACGTAGGAAGCGGTGGAGGTGAGATTGGAGCCAGGAAGCTAGATAAGGACTTGATGTGTCCGATTTGTATGGAGATAATAAGGAGAATGCATCTCGGAATGCTTGACAGTGGAAACTTAGATGTCACGTTTCTTTTCAGAGTCTTATGGAGTGTTGACTTCTAACGAACAGAACCATCTATGCTTGTATCTGGTAGTGAGTCTAGTGACGATTGTAAGGTTAAAGTTTGGTGCACAAGACAAGAAGAAAGTGTGCTTAATATAGATATGAAAGCAAACATATGTTGCGTCAAGTACAATCCTGGCTCAGGCAACTTCATTGCGGTGGGATCAGCTGATCATCATATCTACCACTACGATTTGAGAAACATAAGCCAACCACTTCATGTCTTCAGTGGACACAAGAAAGCGGTTTCCTATGTGAAGTTTTTGTCCAACAACGAGCTCGCTTCAGCATCTACAGATAGCACACTACGCTTATGGGACGTCAAGGACAACTTGCCAGTTCGGACATTTAGAGGACACACTAACGAGAAGAACTTTGTGGGTCTAACAGTGAATAGCGAGTATCTCGCATGCGGAAGCGAGACAAACGAAGTATATGTGTATCACAAGGAGATCACGAGACCTGTGACATCGCACAGATTTGGAACACCAGAGATGGACAATGCAGAGGAGGAAGTTGGTTCGTATTTTATAAGTGCGGTTTGCTGGAAGAGCGATAGTCCCACGATGCTGACTGCGAATAGCCAAGGAACCATCAAAGTTCTGGTACTCGCTGCTTGA
Protein:  
MEAISKDPFVPAVKPDQRTTSIGEAAHRHENDDVGSGGGEIGARKLDKDLMCPICMEIIRRMHLGMLDSGNLDVTFLFRVLWSVDFXRTEPSMLVSGSESSDDCKVKVWCTRQEESVLNIDMKANICCVKYNPGSGNFIAVGSADHHIYHYDLRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGTPEMDNAEEEVGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA